Software Gene Expression Biochemistry and Molecular Biology

Software Gene Expression Biochemistry and Molecular Biology

Sites offering or presenting software to be used in research on the processes related to the central dogma of molecular biology: transcription from DNA to mRNA, splicing, translation to polypeptides, processing of the polypeptides (specific proteolysis, conjugation to carbohydrates, lipids and prosthetic groups) and the control mechanisms involved.

Top: Science: Biology: Biochemistry and Molecular Biology: Gene Expression: Software

See Also:

Premier Biosoft International - Developers of software for real time PCR primer design, TaqMan, molecular beacons, DNA microarray analysis, drawing restriction plasmid maps, gateway cloning experiments, protein interaction network and functional genomics.
Gene Kinetics - Software for transcription and cell cycle genes, providing peak intervals, max values as a function of decay of gene-activating principle, inhibitory mRNA, gene amplification, anabolic capacity and proteolysis.
Delila - Software for Analysis of Protein and Nucleic-acid Sequences.
Improved Outcomes Software Inc. - Offers programs and custom development for the visualization, analysis and classification of gene expression and proteomics data, image-guided surgery and information technology. Based in Inverary, Ontario.
Oligo Software - Consensus, multiplex and degenerate primers, oligonucleotide database, secondary structure and difficult sequencing for researchers in PCR and related technologies. Developed since 1989, by Molecular Biology Insights Inc.
Integrated Genomics Inc. - Software and services for life science, particularly for microbial genomics, in Chicago, Illinois.
Fast DB - Alternative splicing and transcripts database that gathers several bioinformatic tools aiming to study expression of the human gene products.
Dynabyte BioLabs - Off the shelf software and software development for analysis of gene expression data and genetic networks.
RNAdraw - A program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows.
DNAStar - Develops sequence analysis software for molecular biology.
List of Lists Annotated - LOLA is a platform for uploading and comparing microarray generated gene lists, with curated, annotated and published data linked to citations, in an interface maintained by the Genomics Core Facility, George Washington University.
Strand Life Sciences Pvt. Ltd. - Develops data analysis and visualization software for microarray gene expression data from its base in Bangalore, India.
BioMath Solutions, LLC - A consulting company specializing in data analysis of high throughput molecular technologies, experimental design, biomarker prediction, and software and product development.
Nucleic Acid and Protein Sequence Analysis Software - From the Pittsburgh Superconputing Center, Carnegie Mellon University, Pittsburgh, USA.
Short Time-series Expression Miner - Freeware for clustering, comparing, and visualizing short time series gene expression data, maintained at Carnegie Mellon University, Pittsburgh.
PGEToolbox: A Matlab Toolbox for Population Genetics and Evolution - PGEToolbox enables population genetists to manipulate DNA polymorphism sequences and SNPs, compute basic statistics of sequence variation, and carry out neutrality tests.
Chang Bioscience - Microarray analysis, lab inventory, and primer sequence database tools from San Francisco, California.
Redasoft Corp. - Makers of restriction enzyme database program, to design cloning experiments and produce high resolution graphics of plasmid maps and alignments. Includes corporate details of company in Bradford, Ontario.
MILANO - Microarray Literature-based Annotation - A web-based tool to annotate lists of genes derived from microarray experiments. The annotations are generated by searching literature databases (Medline, GeneRIF) for the gene's synonyms co-occurrences with user-provided terms.
MB DNA Analysis - Program for statistical analysis and evaluation of the biological significance from microarray data. Includes key features, registration and download for Windows and Linux.
Gentellect - The "Gene Expression Analysis System" searches several gene expression databases and shows the results in several graphic formats.
DNA Software - Company selling software intended for molecular biology.
Qlucore - Supplies software to explore and analyze microarray gene expression data sets, in Lund, Sweden.
The Ribosome Builder Project - A software project to simulate the ribosome.
Koada Technology - Supplies software for automated analysis and quantification of microarray images.
AiO - Downloadable package integrating database, oligo ordering, DNA and protein analysis programs from Konstanz, Germany.
Score Comets - Site introducing the comet assay, including equipment needed, hints and tips along with information on the Comet Assay IV software scoring system.

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