Software Development Software Bioinformatics Biology


The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an online resource for modules, scripts, and web links.








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Bioperl.org* - The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an online resource for modules, scripts, and web links.

  • BioWarehouse Database Integration System - Integrates multiple public bioinformatics databases into a single relational database system within a common bioinformatics schema.
  • BioJava.org - The BioJava Project is an open-source project dedicated to providing software Java tools for processing biological data.
  • NCICB Core Infrastructure - The National Cancer Institute\\'s Center for Bioinformatics produces the caCORE infrastructure, an open-source enterprise architecture for cancer informatics.
  • Biochemical Algorithms Library - C++ framework for rapid software prototyping in molecular bioinformatics modeling.
  • The BioSharp Project - BioSharp is an open-source project to provide a framework for processing biological data using C# and other .net languages.
  • BioLisp.org - BioLisp.org is a public resource supporting scientists who software development use software development Lisp to develop intelligent applications in the software development biological sciences. software development We collect and disseminate Lisp biocomputing software development code, and gather software development pointers to Lisp and other software development Intelligent BioComputing methods.
  • The Darwin Manual - Guide to running this programming language. Library contains bioinformatics programs to software compute pairwise alignments, phylogenetic trees, multiple bioinformatics sequence alignments, and to software make secondary structure predictions.
  • AceDB - A hierarchical database system for displaying genomic data (originally C. software development elegans), suitable also for displaying other scientific data.
  • Bielefeld University Bioinformatics Server - BiBiServ supports Internet-based collaborative research, software development and bioinformatics distance education software in bioinformatics.
  • Dynamite - Code generator for writing dynamic programming programs.
  • The Scriptome - A set of software tools that filter, format, bioinformatics and merge software data in tabular or common biological bioinformatics formats. Organized as a software classified collection of Perl bioinformatics one-liners.
  • High Throughput Screening Tools - Analytical tools and SQL scripts that solve common bioinformatics problems in software drug discovery.
  • Brainwave Biosolutions - Bioinformatics Company focused on the development of data mining products, databases, visualization and analysis tools.
  • PISE - Given an abstract definition of a program\\'s parameters, PISE can software generate whatever style of interface from the configuration module.
  • Phylogenetic Analysis Library - PAL library is a Java toolkit for determining evolutionary trends.
  • EST2uni - A tool to analyze a set of ESTs. Cleans, clusters software development and annotates the sequences and prepares a web site to software development browse the results in a complete automatic way.
  • MolTalk - Software development for structural bioinformatics. Runs on Unix, software Windows and bioinformatics MacOSX.
  • AcePerl - OO Interface to AceDB
  • Bionconductor - The Bioconductor project produces an open source software software framework that software will assist biologists and statisticians working software in bioinformatics, with primary software emphasis on inference using software DNA microarrays, built mostly using R.
  • BioRuby - BioRuby project aims to implement an integrated environment software for Bioinformatics with Ruby language.
  • NeoBio - An open source library of Java bioinformatics algorithms. The current version consists mainly of sequence alignment algorithms such as Needleman- Wunsch and Smith-Waterman.
  • Sight - Extendable parallel system for automatic genome analysis. Software for analysing bioinformatics all potential genes in a defined genome region. Given two bioinformatics marker names, can output reports of genomic features between them. bioinformatics Features for converting between naming systems, s
  • InterMine - A general-purpose object-oriented data warehouse system developed as software part of the FlyMine project and made available software as stand-alone open-source software.
  • JCell - A Java based framework to reconstruct genetic interactions bioinformatics from microarray software data.
  • DW Computing - Web design, computer sales, and custom programming, including software development bioinformatics.
  • The Systems Biology Markup Language - Information on the SBML project which helps develop bioinformatics a variety of software packages for SBML, a bioinformatics computer-readable format for representing models of biochemical reaction bioinformatics networks in software.
  • The XEMBL Project - XEMBL provides access to the EMBL/GenBank/DDBJ Nucleotide Sequence software development Database, providing output in various XML standards.
  • BioQuery - Tools that searches multiple biomedical databases from your desktop.
  • Pathway Tools - Predict metabolic pathways from genomes and graphically depict software pathways. Visualize software development gene expression data on a metabolic software pathway map. Generate a software development metabolic wall chart. Includes software a genome browser and support for software development transcriptional regulatory software networks.
  • BioPHP - An open source project to develop PHP code software development and bioinformatics scripts for biocomputing. A wiki-like service allows software development collaboration between bioinformatics developers.
  • Cell Electrophysiology Simulation Environment (CESE) - A framework to perform electrophysiological simulations. Useful for simulations of action potentials, individual ionic currents, and changes in ionic concentrations.
  • BioPython - The Biopython Project is an international association of developers of software freely available Python tools for computational molecular biology.


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