Software Biology

This category is for sites about software aimed primarily at research, evaluation or education in biology. Many branches of Biology have their own category for software which can be reached through the appropriate link.

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• Top/Science/Software

• Amira: Visualize, Analyze, Present - Software platform for visualizing, manipulating and understanding life science and bio-medical data coming from all types of sources and modalities.
  
• Minnesota Biomedical Business Network - MBBNet lists health-related software and information management, device, and display companies in Minnesota.
  
• Scanalytics, Inc. - Scientific image processing software and systems for Macintosh and Windows applications, including fluorescence microscopy, array technologies, high throughput imaging analysis, gel analysis, and forensics.
  
• The Frangakis Group - Provides an electron tomography toolbox for Amira. The EMPackage is a powerful toolbox for three-dimensional electron microscopy in Amira.
  
• Biosoft - Programs for data analysis, graphics and statistics.
  
• Multi-FASTA to FASTA Converter - Freeware program that will split a multi-FASTA file into multiple standard FASTA files.
  
• Feeding Frenzy - Bean There Grown That is an educational software CD-ROM and a seed-growing science kit. User grows seeds and performs experiments.
  
• Jumper - Open source, web-infrastructure platform that allows users to tag and link any data object. It can be used for organizing and searching assay data across multiple storage repositories.
  
• Java biology lab - A wide variety of free online biology software programs.
  
• LemnaTec Image processing in Biology - Image processing hard and software for biotests (Lemna, Bonit, Daphnia) Distributor for various software firms.
  
• LIMS - Laboratory Information Management Systems. Compendium of information on state-of-the-art data management software.
  
• Serf - A Windows-based program for electrophysiologists for analysis of single channel currents and spike trains.
  
• LabSys - Provides Laboratory Information Management Systems for all laboratory data management issues.
  
• SimBiotic Software - Provides a range of interactive software for biology education including virtual labs which simulate real life experiments.
  
• Statistical Computation Website - Online software for calculating probability, linear correlation and regression, chi-square, t-procedures and ANOVA from Vassar College.
  
• ImStar - Bio-imaging software and fully automated systems for research and clinical diagnostic with focus on genetic diseases and cancers.
  
• Stat-Ease, Inc. - Statistical software, training, and consulting on Design of Experiments for scientists and engineers.
  
• BioVis3D: Research All Dimensions - Flexible and easy-to-use software designed for researchers to reconstruct 3D models from histological serial sections.
  
• Spellex Development - Biotechnology spell checking software for spelling words in the bioscience field including molecular biology, biomedicine, biophysics, microbiology, genetics and biochemistry
  
• eBioSys - Provides eLab, an easy-to-use laboratory information management system that improves sample throughput and reduces IT costs. Also offers IT consulting services for the biological sciences.
  
• MCID Core - Image analysis software solutions for neuroscience, biology and other life sciences.
  
• Nonlinear Dynamics - Product range includes analysis software for 1D and 2D electrophoresis gels, mass spectrometry and LC-MS as well as tools for multivariate statistical analysis.
  
• Dynamic Clamp - DYNCLAMP4 is a program to insert artificial synapses and conductances in up to 4 neurons in real time.
  
• MireSoft - Provides CiteSmart, a software program to manage bibliographic references when working with PubMed. CiteClick and RefClick can cite and store references with a single click.
  
• Indigo Instruments - Distributes biological and medical and software.
  
• Kalaimoscope Motion Tracker for Live Cell Imaging - Provides biological insights by finding, measuring and tracking image objects. High level statistical analysis tools and grid-computing capabilities are built in.
  
• MPN Assay Analyzer - Allows the estimation of the number of microorganisms by dilution techniques.
  
• Determix: Lysandra Online Project - Provides biological databases, bioinformatics software and interactive keys.
  
• MetaSystems - Manufacturer of automatic microscopy imaging systems for research and routine labs.
  
  

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