Software Genetics Biology

Software

Genetics:Software provides links to software for genetic research and teaching from the cellular level up to genetics of populations. Software covered by other categories, such as evolution, phylogeny and molecular biology (DNA sequences) will be specifically excluded.

• - Colony management, supports creation and tracking of research animals: transgenic and congenic lines, knockouts and outbred strains.
  
• - A complete suite of population genetic analysis programs for MAC. Includes plug-in modules.
  
• - Program for mapping quantitative trait loci in experimental crosses. Includes sample graphics and tutorial in pdf format.
  
• - Open source database and analysis package used to archive and analyze expression data from gene chip experiments. Includes microarray center workflow management, and researcher tools to analyze final data.
  
• - Supply pedigree drawing and genetic data management software for genetic research with a built-in customizable relational database.
  
• - GeneHunter, MapMaker, Primer, and RHMapper documentation and free software, in UNIX and C source code.
  
• - Instructional software for basic genetics, such as DNA, PCR, Mendel, Hardy-Weinberg, meiosis and computer simulations. Download WIN and MAC demos and order online.
  
• - Transgenic mouse colony tracking and management software for Mac or Windows. Includes demo software and manuals.
  
• - Database application designed to simplify the collation, sorting, comparison and identification of SAGE tag sequences.
  
• - Graphically represents the effect of genetic drift on gene frequency of one or more populations for a single locus, two allele model in a closed population using stochastic simulation methods. The DOS program is free.
  
• - Web-based microarray analysis system that combines data management and analytical functions with integrated, current gene annotation from public databases. Product overview in pdf format.
  
• - Application for viewing and editing DNA and amino acid sequences. Integrated alignment, PCR, BLAST searches, and shared databases. Windows version is available for download (English and German).
  
• - Database application for transgenic mouse colonies. Built-in networking capabilites, for both Mac and PC. Downloadable demo version.
  
• - Software that models population genetics with emphasis on genetic drift, selection, and migration.
  
• - Collection of primarily Fortan programs for genetic analysis. Requires registration to download.
  
• - Extensive list of linkage, mapping and pedigree software with links for obtaining copies.
  
• - Open-source program to automate or speed up the analysis of DNA fragment length polymorphism samples run on fluorescence based gels . Instructions for use and program download available .
  
• - Freeware record keeping system designed for a breeding colony of transgenic mice. Includes program description, system requirements, and installation instructions.
  
• - Guide and list of commands used to run this programming language. Library contains programs to compute pairwise alignments, phylogenetic trees, multiple sequence alignments, and to make secondary structure predictions.
  
• - Offers links and other resources for genetic analysis software from The Rockefeller University.
  
• - Open source software for executing and integrating analyses of biological sequences. Includes documentation and installation instructions.
  
• - Software directory of general interest in molecular biology and genetics.
  
• - RASA 2.2 and other Mac software for phylogenetics, comparative genomics, and sequence analysis - from Penn State University.
  
• - Set of statistical methods for discrete genetic data analysis, designed especially for microsatellite data analysis. Includes downloadable versions for Windows and Linux.
  
• - Program that draws chromosome maps (as EMF files) using the output of MapMaker EXP. Delphi source code is freely available upon request. The software is available under the MIT licence.
  
• - Designed to create a database of mutation loci, to make this information available to as many people as possible.
  
• - Online program that calculates the distribution of offspring genotypes from dominant, codominant and recessive gene crosses, for up to 6 genes.
  
• - US National Institutes of Health site with extensive genetic linkage analysis application resources on high performance computer systems. Formerly the Computational Methods and Algorithms Group.
  
• - Database system to build and publish synonymised checklists of species. Species descriptions include pre-established fields and detailed descriptions employing any number of user-defined fields.
  
• - Software for selective mapping and bin mapping by Daniel Brown and Todd Vision. WIN version, documentation and references are available here.
  
• - Genetic networks controlling development in Sea Urchin represented as Java applets. Formal scheme. Molecular interactions modelled as Petri Net.
  
  

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